CLI and DMA-based Archiving

Features

  • EMBL-specific: Dataset archiving is now forwarded to the ITS DMA Application
  • The command line interface has been greatly enriched (see the new CLI section for details)
    • For EMBL users: the CLI is available on all servers (e.g. cluster nodes and seneca) under /g/funcgen/bin/stocks
  • Allow user with data manager role to register data on behalf of group members. This enables e.g. automated NGS data registration (using a technical user).
  • Samples (and other sample types) now have a code field whose behaviour is similar to specimen, equipment, and consumable code; i.e. two samples that belong to the same group cannot have the same code.

Improvements & Fixes

  • Sample lineage won’t offer deleted samples/specimens in drop-downs